NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268324_1010044

Scaffold Ga0268324_1010044


Overview

Basic Information
Taxon OID3300028251 Open in IMG/M
Scaffold IDGa0268324_1010044 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_17JUL2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)673
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018870Metagenome232Y
F024245Metagenome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0268324_10100441F024245N/AGMFAAKKQDATSVAQSGALYAPQNPISQHVPPGNGIA
Ga0268324_10100442F018870GGAMFVAKKTRRNFGCTKWCILCTLIPDLTTGTSRQRNRTKPPRNLVLGLKKWIWHVHCEKTRRNFGSTKWCILCTPKPDLRTGTSLQRNRANPPRNLVLGLKKWIGHVRCEKTRCNFGSTKWCILCTPKPDLTTCTSRQRNRAKPPRNLVLGLKKWIGQVRCEKTRRNFRSTK
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