NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255174_1018541

Scaffold Ga0255174_1018541


Overview

Basic Information
Taxon OID3300028275 Open in IMG/M
Scaffold IDGa0255174_1018541 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1302
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020353Metagenome224Y
F099302Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0255174_10185411F099302N/ALVPKPLYDEEVNTSADLRKQNEDLTKQVEDLTQKVADLEVNLKSEIDNRLNIEQTNDALVNQLNTLTQTVDDFAVQIQTSLQKSVEEGILRASLQSQNTGFKAQIQALIKQIDSLNSIVEGLQSQLGAVQNQQAIVQGTQAQAQAAGADVINEVAIVKLEPEEDTNAPKIWARFKSGGGSQWKNGKALSITNNDKKEITVKLTKTNPESGRDFYSIPSTSFTMAPGENKSIEFSLTENTVGDLDARKKGGLFGGHTHSKDYKGGSLKVTITRADGTSKEKTYDAGFGKYHPSSY
Ga0255174_10185412F020353N/AMSITKYTNFDSIDINKSNQGEFLMKDDKFIVTKNEVEETDFGDCKYDVMEVSVYDINNNLLPHKTGNNVAYIKTGDIKNYLYNLTNKGGQKELAIDIEKLLNDLGFTNGILKVIINFVRNRVGNDNQLSRVWIQE
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