NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257116_1121828

Scaffold Ga0257116_1121828


Overview

Basic Information
Taxon OID3300028277 Open in IMG/M
Scaffold IDGa0257116_1121828 Open in IMG/M
Source Dataset NameMarine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_120m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)664
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070212Metagenome123Y
F074479Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0257116_11218281F074479N/AHFSDKEKFSDEEIEELREKQYYVYRGYLNDFRHLFGHQIDDVEFETIFEKLMNGFLRYRLLDMVNTKRYLFNSFKPYLDKEGNIKDEHMDFSSETYCSSSLTHDENEYETDTENID
Ga0257116_11218282F070212GAGMKPIQKILTDLVQHIKNEEPIKPIHKHQYSYDRMDWVKNNLSKQDDLYDIGLENLRVLIYQLSLFNQHILTDENGKEINKKPRRNNEE

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