NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256413_1186209

Scaffold Ga0256413_1186209


Overview

Basic Information
Taxon OID3300028282 Open in IMG/M
Scaffold IDGa0256413_1186209 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_77 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)747
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078182Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0256413_11862091F078182N/APRAISILPVMAPLASFVLAAGVAAQDPEQPHLAQAWQALSSGDGMPGEVGLESYIFLEKDEGDFQAHVWDYGESCKKYELNSHFKETSPAFRGGTFYYKCDNVDCCFDGTGGTITKIPDVKKWDISTQGKFSRVEVQFDGFIDTTELYDKVITGAEQWSEKHHIMNVNYSYHLHREDNGDVISHRIDYSAIGAAPGTIKYGNFTVQHDIDAFKQAFFSLPAACQSKQIFGCGDDKVQQIERKYFKHSSW
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