Scaffold Ga0257126

Basic Information
Taxon OID	3300028287 Open in IMG/M
Scaffold ID	Ga0257126_1003038 Open in IMG/M
Source Dataset Name	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028287 Open in IMG/M

Scaffold ID

Ga0257126_1003038 Open in IMG/M

Source Dataset Name

Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10746
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (21.74%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10746

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (21.74%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Canada: British Columbia
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)	120
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: British Columbia

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

120

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006322	Metagenome / Metatranscriptome	376	Y
F010877	Metagenome / Metatranscriptome	298	Y
F026712	Metagenome / Metatranscriptome	197	Y
F035552	Metagenome	172	N
F050369	Metagenome / Metatranscriptome	145	N
F077286	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257126_100303811	F077286	N/A	MSKLTYTVEWEGDVINYKQDFESIEEARIAMIMHHNRNAVMKVGILKED
Ga0257126_100303814	F026712	N/A	MKQTFYPTDSEQQCLMDIVINEFANRHLPMDNYNVQEVAYRQAISDGAMRTDYYFNN
Ga0257126_100303820	F010877	N/A	MSTKELLIALLSGTMPKGDTKSEMFKFYNSMVGKSKYFPRSENPNTACGSCIQRVKTSIWKWYHSDETAPNFSELVFTGRLGAHNIPLYSIEDASKKK
Ga0257126_100303821	F006322	N/A	MPAKRNKKGDVVSGRGSELTTLQSQFLEGIRDNGMDASSKIAKELGYTNYYRDRRTTGTAFHKALMEIANSELKSIEAAKGTNLTALIRIRDMAISNDDMKVAMEAIKIINDMQGYKAPTKVEQTKIDITATIDLTAPDEEQDYLDIDAD
Ga0257126_10030388	F050369	N/A	MKITEKDLRNWFPRDMRFLHFCAKYYGYSFHNDEVVERANHLAVLNVMRLVNRDQEFEDEAHMTGMVMSSFRYAILNSYTNSLTANEKNLEVRNESEVTYGDGSEEYSKYQANAIADTKEIDNLIDVVRDYAETNLPYLQRRALIECVIGESSMKELATDTDTSVRKVHLAKQKAIRRIKKFIGVLNENEKKYGKKEADGKYISPSRSKLQIAIQLEPIRRDETRERDYSKAMSFVNTPPKV
Ga0257126_10030389	F035552	GGA	MSVKDDLLISADLSNLYWVLGELAEKAKEDNDLIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLRYDGTVEALNLKTKILSQVMNEKMDEDVNNQL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0257126_1003038

Overview

Ecosystem & Geography

Associated Families

Sequences