NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228617_1093101

Scaffold Ga0228617_1093101


Overview

Basic Information
Taxon OID3300028297 Open in IMG/M
Scaffold IDGa0228617_1093101 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)750
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008190Metagenome / Metatranscriptome337Y
F046982Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0228617_10931011F008190N/AALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGNLNKETVGGIQTYVETLSDKPITYKIYHSPDITVNGTAELFDDIIEFE
Ga0228617_10931012F046982N/AMKTHRIFNKGQNVYCLLASHTNPNILLPVKGKILDSKWDPVNPLYQIRIIKFYDNMRFLKQHFFDMNFRHMFENRARKMILKAEDFKTVKVLEDRLNEKDRERFYVVIESVMCTKTKVGLSELFEKVQLYMISKN
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