NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268261_10022148

Scaffold Ga0268261_10022148


Overview

Basic Information
Taxon OID3300028325 Open in IMG/M
Scaffold IDGa0268261_10022148 Open in IMG/M
Source Dataset NameNasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5159
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000003Metagenome14941Y
F000505Metagenome1071Y

Sequences

Protein IDFamilyRBSSequence
Ga0268261_100221481F000003N/AMLYREIIAVCSQIHTKHINTLCGQNVELLNVKLAVHVVTTGL
Ga0268261_1002214813F000505N/AMLQSLFYLTIALHVSGIIITHLQEHKTTVTTESGDRYTVIDRVKLLLLKSTDRLD
Ga0268261_100221482F000003N/AMVYREIIAVCSQIHTKHINTLCGQNVELLNVKLAVHVVTTGL
Ga0268261_100221484F000003N/AMVYREIIAVCSQIHTKHISTLCGQNVELLNIELAVHIVTTGF
Ga0268261_100221486F000003N/AMLYREITAVNSQIHTKHISTLCGQNVELLNVKLAVRLVTTGL
Ga0268261_100221487F000003N/AMLYREIIAVCSQIHTKHISTLCGQNVELLNVKLAVHIVTTGL
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