NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268261_10035416

Scaffold Ga0268261_10035416


Overview

Basic Information
Taxon OID3300028325 Open in IMG/M
Scaffold IDGa0268261_10035416 Open in IMG/M
Source Dataset NameNasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4152
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000357Metagenome1238Y
F000963Metagenome820Y
F002128Metagenome591Y
F002910Metagenome521Y

Sequences

Protein IDFamilyRBSSequence
Ga0268261_100354161F000357N/AMYQNFIIPYLYEAQHVSGDTPPIIRSLKLHWQPLVFHTWKAVGRVV
Ga0268261_100354163F000963GAGMLHTLRFFSSKCRLFHNVTFFDSCVIRILHTGVLKFKLKTPVPKG
Ga0268261_100354164F002910N/AMEMKFLRYLLGITNLDKEKNQCIREKTGAQNIVKEIKQY
Ga0268261_100354165F002128N/AMFEGVRAAMTTRHLEDQWLNRKECRLGSGRRLQLSQDRKDR
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