NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268261_10180492

Scaffold Ga0268261_10180492


Overview

Basic Information
Taxon OID3300028325 Open in IMG/M
Scaffold IDGa0268261_10180492 Open in IMG/M
Source Dataset NameNasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1927
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027233Metagenome195Y
F039193Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0268261_101804921F039193N/AMLYKEIIVVCSQIHTKHINPLCGQNTEFLNVKDGGTYSDHWALDG
Ga0268261_101804922F027233N/AMLYKEIIAVCSQIHTKHINPLCGQKVEFLNVSVGGTYSDNWALEG
Ga0268261_101804923F027233N/AMLYREIIAVCSQIHTKHINTLCGQNVEFLNVSVGGTYSDNWALEG
Ga0268261_101804924F027233N/AMLYREIIAVCSQIHTKHINPLCGQNVEFLNVSVGGTYSDNWALEG
Ga0268261_101804925F027233N/AMLYKEIIAVCSQIHTKHINPLCGQNVEFLNVSVGGTYSDNWALEG
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