NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247567_1076590

Scaffold Ga0247567_1076590


Overview

Basic Information
Taxon OID3300028338 Open in IMG/M
Scaffold IDGa0247567_1076590 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 15R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)798
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012981Metatranscriptome275Y

Sequences

Protein IDFamilyRBSSequence
Ga0247567_10765901F012981N/AMKRKTASVMKAKGIVKAESKLVKRTKAPGKTVPLKRVRIGILVGKDFDPVKKGTHDPEYPKKLILSQDDWGKYQVDVSTALKMQQLHPDLLDVDIIPGSEINEKRLQRNHVNLNFWYDAGVAMLNQDTLGKKHVDEVMKTHKNPDCRLDPSWDYYDWVLCKPRYMKQCMKAGIPMIPTVMYENGFDPKQCMKDVQKKGWDKFFVKVGHFTFFGDGAINGKTADFLGPRAKELEDYAKANKSSKVF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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