NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306916_112349

Scaffold Ga0306916_112349


Overview

Basic Information
Taxon OID3300028339 Open in IMG/M
Scaffold IDGa0306916_112349 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF 2006 #2 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)558
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep Lake
CoordinatesLat. (o)-68.5627Long. (o)78.1882Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037512Metagenome167Y
F050795Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0306916_1123491F050795AGGTGGMKALEIPKRFTGTVYVCMFSDPKSCLYGDTFLSQFDPKGSNDSITLGKEEVDIALDCTGTLDKQVDQLRTARQKIIDKASGEARQIEEAIESLL
Ga0306916_1123493F037512N/ADPDSACQFVIYPRAATEREAVDQANGQYNPHFEVDRFAVTEIMK

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