NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306887_109690

Scaffold Ga0306887_109690


Overview

Basic Information
Taxon OID3300028352 Open in IMG/M
Scaffold IDGa0306887_109690 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #138 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)673
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000607Metagenome992Y
F002411Metagenome561Y

Sequences

Protein IDFamilyRBSSequence
Ga0306887_1096901F000607N/AMDKFSSEVHRVHMELGGKLLDSLRIKTQFLERLQSVSVVDGAAHTLKDDVESNGGSLENVANVFVLFVCGVQLVLRSGVLTVLDLDEVDVTPSFAEVFRSVLSGVGGSNGGWRCC
Ga0306887_1096902F002411GGAGMVIRSLLPISMETMHDPKEPVFLIALRIMRHAMLCLS

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