NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306872_100399

Scaffold Ga0306872_100399


Overview

Basic Information
Taxon OID3300028361 Open in IMG/M
Scaffold IDGa0306872_100399 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17532
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (34.48%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022145Metagenome215Y
F034486Metagenome / Metatranscriptome174Y
F044910Metagenome153Y
F054439Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0306872_10039910F034486N/AMSEENEQSLIQKKMALAASEHAPVVIELMKDCMSQTPIVAKTEWETIVNAITLEVQGTMLRTMVDHLEAIRKGVLHESK
Ga0306872_10039915F054439N/AMKQMAYARRLFGGDGTNKKQIALDCGYSPNVADSVSSHIESKPGFNNAMSALAIDSNNIALAAMSEFKARGFKDFSNKELTGALNAIGNAWSKFNAPLLKNPDEGNKSTNKLRTVILQQVENQTISPGGEIQKEPKIHEAEVETEF
Ga0306872_1003993F044910N/AMTLQDAHTRKKSIPVEVEVGTETVIAAVDGAWIYVHELMGDLAVGGDLTVLSGSTILGKFSLDAGQGITLQDESGEDNRPRFECKPGDDFVLTVTGGTFTGTCHYSLRY
Ga0306872_1003999F022145N/AMSAKESKHKGFTVQVGYSKEAIEKKLIKFITTKNGDEFEISAEEMSSMLIGGVNSNTLEATFVESDRISVVEVGRQLECVLDKDMKKDEKINLNYTHPYPLEFALIEEAYKIAKVDMDIPKIELTPEYIATVREKVSPEQESYTNKFYKSFKNLKLK

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