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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028361 Open in IMG/M |
| Scaffold ID | Ga0306872_100399 Open in IMG/M |
| Source Dataset Name | Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498 (v2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17532 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (34.48%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Rauer Islands | |||||||
| Coordinates | Lat. (o) | -68.5558 | Long. (o) | 78.1913 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022145 | Metagenome | 215 | Y |
| F034486 | Metagenome / Metatranscriptome | 174 | Y |
| F044910 | Metagenome | 153 | Y |
| F054439 | Metagenome | 140 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0306872_10039910 | F034486 | N/A | MSEENEQSLIQKKMALAASEHAPVVIELMKDCMSQTPIVAKTEWETIVNAITLEVQGTMLRTMVDHLEAIRKGVLHESK |
| Ga0306872_10039915 | F054439 | N/A | MKQMAYARRLFGGDGTNKKQIALDCGYSPNVADSVSSHIESKPGFNNAMSALAIDSNNIALAAMSEFKARGFKDFSNKELTGALNAIGNAWSKFNAPLLKNPDEGNKSTNKLRTVILQQVENQTISPGGEIQKEPKIHEAEVETEF |
| Ga0306872_1003993 | F044910 | N/A | MTLQDAHTRKKSIPVEVEVGTETVIAAVDGAWIYVHELMGDLAVGGDLTVLSGSTILGKFSLDAGQGITLQDESGEDNRPRFECKPGDDFVLTVTGGTFTGTCHYSLRY |
| Ga0306872_1003999 | F022145 | N/A | MSAKESKHKGFTVQVGYSKEAIEKKLIKFITTKNGDEFEISAEEMSSMLIGGVNSNTLEATFVESDRISVVEVGRQLECVLDKDMKKDEKINLNYTHPYPLEFALIEEAYKIAKVDMDIPKIELTPEYIATVREKVSPEQESYTNKFYKSFKNLKLK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |