NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306872_100543

Scaffold Ga0306872_100543


Overview

Basic Information
Taxon OID3300028361 Open in IMG/M
Scaffold IDGa0306872_100543 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14352
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (95.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000656Metagenome956Y
F004320Metagenome443Y
F018128Metagenome236Y
F046845Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0306872_10054310F004320AGGAGMSSRVRMSPEGRREVILRAAVALTQDAGCIDSWSRQDVANKCVPPTSPETVKHYFLMPDLRDAVRVLLDK
Ga0306872_10054313F000656GGAGGMQMPHNGFDSLAAVARLNTDDTSHHRERWPTLAWVWDELDELRHWQDEAIDAEDYAALEAERDALSDVAEQRDALSQAVRLLLGPEPDMERVQAVLAGGRA
Ga0306872_10054314F018128GGCGGVTDNAEQAARMRALWSAVVLTSINDAIHHAAREPENQKGRALKTLALWANSRNGREVLDLAGINPDNRVTDGMLAFAAKGVPVTQPRKRGTNL
Ga0306872_10054319F046845AGGAGMTKEQYADLNATIFDFQKKIMLHDIASMDPEVRATMEAVEAQLDALRTGKLFELR
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