NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306872_101201

Scaffold Ga0306872_101201


Overview

Basic Information
Taxon OID3300028361 Open in IMG/M
Scaffold IDGa0306872_101201 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8157
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (30.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013253Metagenome273Y
F054483Metagenome139N
F100124Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0306872_10120113F054483N/AMQEYTSPMTFKKPDLSRFNFTVTGSASEQYGEQVAITAKLLGRPFFQLHKIFEKEGWTLEEITSAYQKATKHSGNCEPKIAWWANRKRRNKVGDN
Ga0306872_10120114F100124AGAAGMFWNKKEVVEVDGLPITLSKRQAFNRFTGAITSRFLAYKDGDEWRGLVGYEQFREEMDETRKRQELILDHLKLKYVPETETKEPAKLVERTNYLTVNSGNVPSWTDWVVSEGSGCDQTPTPPKKKGRSKKK
Ga0306872_1012018F013253N/AMEITKYTVELTSSEMFDLAYALEHRIEADLSLTTPLKDDGIFNDFECELKILQEFVSSFGYKLDVSCKTENGYKWENNPKKYDIAEDWLKDLLKQRRKELAAKNK
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