NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306872_101817

Scaffold Ga0306872_101817


Overview

Basic Information
Taxon OID3300028361 Open in IMG/M
Scaffold IDGa0306872_101817 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5885
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001894Metagenome / Metatranscriptome621Y
F020855Metagenome221N
F068214Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0306872_1018176F020855N/AMTYTLDTPYSNQVIFLNSQNSVLKTIDGVGQYQYNFQTPIQLPINCEMLISVTDAQIPNIFPNVGSTNNKISFSVPIFSMFFTITIQEPDGTTDRAYNVNEWLAFVNEQIYIESSGRFSLYGSFQSTMSKIQWFCDFAFQIIDTPNYPTTCYDLIGFKKDTHNQIIYESNEILLSSIVNPSFHITMPSSVNFAGTRFIFVKFNNISVNNLNSNGITDNAMVRIDNNAPFGYMIFYRPSEVQRFIIRKQTINNISFSLTDTQGNELNIFSNDAQITLKIEYMYKPEMRSMEEGTINYELRKLSQVPMTKEAIEGAYNPETNEFIRE
Ga0306872_1018177F068214N/AMSLHQMTQKLTPQQANIIPAGKFIYTDETFQLEPPKYVEGEAFARMGKELVPAHFSYGHHNPNFTPMASPSLPMNYGTYIYNSVTGYQ
Ga0306872_1018179F001894N/AMLPTMNESAKIANIHYIYQQRPNKERANKMVKRKLGRFGYELDEANTDKDVLTAKRGNNIHINYTGTNVNSPRDIISDVALATGVQRINPQFKERRQKTRDIMRQYGDDDKDYSLGGHSLGGSIALNTLKQSKSIRDRTKVAHVFNPGYTLPFHESIKPTDKKIKKQLNDKVNIHRVKKDIVSAHANKETAFGNLFEYNHKDKDSDLLEKHSLDTFIDSDL
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Institute for Fundamental Biomedical Research
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