NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306872_101990

Scaffold Ga0306872_101990


Overview

Basic Information
Taxon OID3300028361 Open in IMG/M
Scaffold IDGa0306872_101990 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5470
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003151Metagenome504Y
F004364Metagenome441Y
F009587Metagenome315N

Sequences

Protein IDFamilyRBSSequence
Ga0306872_1019901F003151GAGGMTQFKPGDSVTHNPTGEEWILVAVYGSYVKPGGWPESHALAIDCTLICGCTTTDERNACTRACDAVVL
Ga0306872_1019904F004364GGAGMNHTERPCAAHGWTSYRYAGRYGTIMIGATSTRDALNEADRSLTQGAATVDRLEIWNALTGVYEKVKP
Ga0306872_1019906F009587AGGAGMTHLYQLCHNARRMDRHSEAELWARFKAVRPQDACAVTPARPAPHPMPEQIDAALSWAKNYLLTG
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