NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306908_1047846

Scaffold Ga0306908_1047846


Overview

Basic Information
Taxon OID3300028371 Open in IMG/M
Scaffold IDGa0306908_1047846 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #899 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)594
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003845Metagenome465Y
F027419Metagenome194N

Sequences

Protein IDFamilyRBSSequence
Ga0306908_10478461F027419GGTGGMTLKDWQARWGHHVPAQAITELTDILSPVMPSPAPTARHSEAAGAAQIRLAAGRAGVPLFRNNSGAMTDQ
Ga0306908_10478462F003845N/AATDKAFKAKASGGDLWVYGDIETGILQFVINHGEGGEMSRVGVLEFTRIDGTYPEWRRVVSKGDGGAASLCYDPAVLARLVKAADVIEKGRPIRLTGGQSEGDPIRVDFVASPRLRGTLMPMRWKGA

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