NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306906_1040690

Scaffold Ga0306906_1040690


Overview

Basic Information
Taxon OID3300028374 Open in IMG/M
Scaffold IDGa0306906_1040690 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #897 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)750
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018113Metagenome236Y
F027419Metagenome194N

Sequences

Protein IDFamilyRBSSequence
Ga0306906_10406901F018113N/AEMSRVGVLEFTRIGGTYPEWRRVVAKGDGGTNSVCYDPAVLGKLIKAADVIDKGKGIRLTGGQSEGDPIRVDFAASARLRGALMPMRWMGA
Ga0306906_10406902F027419GAGGMTLKDWQARWGHHVPAQAIAELTDILSPVMPSPAPTARHSEAAGAAQIRL

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