NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306868_1029218

Scaffold Ga0306868_1029218


Overview

Basic Information
Taxon OID3300028378 Open in IMG/M
Scaffold IDGa0306868_1029218 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #832 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1158
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015962Metagenome250N
F059683Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0306868_10292181F015962GGAGMSRHTEYGNSPVGRLISGDPWTKQTTDANNRPIPEDKQPFWFAVAIEKNAPGMNEMLGLMFKAAQAGYGQAPQIMAQINMGLAATAFSWKIADGDEMRANATTGEQELRWKHGQGCWVVKFSTTLPIASAKFMGGVPTYCDPSEIKRGYYVTVPFSTSANGNMDHTAGVYLNPQTVCLVGFGPEIVG
Ga0306868_10292183F059683N/AYRNALEIITAAAKATEVEAEARAKRGERLPGWGITTRYGTSRVSKPPHVIKALTGKDATKTVPMNIGELRAAGLTKAQLAVITEQPTTGFKLEPLDPDTLTRQLNRTNGGT
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