Scaffold Ga0304730

Basic Information
Taxon OID	3300028394 Open in IMG/M
Scaffold ID	Ga0304730_1000027 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028394 Open in IMG/M

Scaffold ID

Ga0304730_1000027 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	184358
Total Scaffold Genes	217 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	143 (65.90%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

184358

Total Scaffold Genes

217 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

143 (65.90%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F003080	Metagenome / Metatranscriptome	508	Y
F006141	Metagenome / Metatranscriptome	380	Y
F018911	Metagenome / Metatranscriptome	232	Y
F020170	Metagenome / Metatranscriptome	225	Y
F043407	Metagenome / Metatranscriptome	156	Y
F048089	Metagenome / Metatranscriptome	148	Y
F073563	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_100002710	F048089	GAG	MKPNKTFKLSKTTKRMIALMKGSTAEQRNQYKRMMIDAELCAAIVPKSVKSDRNAPRGNGPTGYQTNDTGTASTSTV
Ga0304730_100002714	F018911	N/A	MIDYITTFFAIFLLDIVYTYYLRCVQYEQALTASGWSVACYILGSVAVINYTTNHWLIIPAMAGAFCGTYVGMKIRKKQFGV
Ga0304730_1000027160	F043407	N/A	MSRTPPQAVVGITTHGLYGAVPPQLSGQVYTTNTTAGQFLTSTGNGTSWTNNPVDNVMVVSNNPAELEVKGRMVLNGRDLEERLDTIEKVLQIPERDVILEKKHPKLKKLYDDYINALGKYRTFESIKGDE
Ga0304730_1000027169	F003080	AGGAG	MTTAQDLTNQLIHRAKNLKEFVVERDFDSIPGGIVRFNIQHTIGQSARLFVPALTQAEAEEMVDEWFEEDVE
Ga0304730_1000027170	F073563	AGGAGG	MNPKYLYTIKWTQPYATCQMRPYLRHLREEYEIQIEARLARGEFDDAKKVIKRIMSL
Ga0304730_1000027172	F002977	GGAG	MKIQVPAEGIMKTNDWGDSRVYRIACNCGDENHNHNMWVEADDCDIVVTIYTTGKTNWWSKTRWYHIWTLLTKGYIDTESSVHLTNQQAFNYANTLLSAVQDLEQFRKKNEQTKNS
Ga0304730_1000027210	F020170	AGAAG	MSKRVPPLDYQDEETHERLMEAFRQYFKANQNWINKGTRRAGENMRYWLAQIRIIARERREKVQQYRVHLDETKAQKKGDPTE
Ga0304730_100002780	F006141	AGGA	VILEVFLYGFITAFGWWSANHYVIEPYFPPPIEKVESKNKEKQKEN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0304730_1000027

Overview

Ecosystem & Geography

Associated Families

Sequences