NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304730_1000032

Scaffold Ga0304730_1000032


Overview

Basic Information
Taxon OID3300028394 Open in IMG/M
Scaffold IDGa0304730_1000032 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)170074
Total Scaffold Genes180 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (13.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001640Metagenome / Metatranscriptome659Y
F080903Metagenome / Metatranscriptome114Y
F091431Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0304730_1000032138F080903N/AMYNTLLEKQAFNAKEDVKSVIDDLITEINELEEAHEKLESKIEDLEGTIEGLKARVQELEDKLDNSF
Ga0304730_10000322F001640N/AMKKILFFILIPSLSFCQDVVSDTVYLQKQGLNYFIISQIVYSDSTVNIDKKFIGDSLKAISYTVDGAERISGKMSEFAYPFIFNNKSQKQIKYFNDLHLQINKLSIYNSTAQRDTAKFIGNWKLNFNGEIIDGVIQLNSNKRLIFNPDNGKVYTISTNLLLSTFTNQVSFAFNGIKYDLYKYAEGKFATVDGEIKLIKIE
Ga0304730_100003276F091431AGGALDIVFLFLLILFKMALGTKSTTKSPANAVETVKNVDNIIHFMAELTDIRECANPELRVVEDDIAYYKSTSGSLYLWAECTREDGLSQSAMLFKNVLFDKNGTQRYEVGSVVPIDAVVTANSSKEDSLLWKVAPPGVAPKVSISKLSSDTKWVQAVRSGSIKPYVPPGLKLR
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