NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304730_1000498

Scaffold Ga0304730_1000498


Overview

Basic Information
Taxon OID3300028394 Open in IMG/M
Scaffold IDGa0304730_1000498 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34005
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (69.70%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001008Metagenome / Metatranscriptome807Y
F006506Metagenome / Metatranscriptome371Y
F019831Metagenome / Metatranscriptome227Y
F034176Metagenome / Metatranscriptome175Y
F093773Metagenome / Metatranscriptome106Y
F103236Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0304730_100049828F103236AGGAMIHVSFGLSNPWGTSFDNLWNRSGRLTRNKSWELELLKGRELIGFEFGYTMRQSHAGLNLELALLGHSLAFQIYDNRHWDHTLNAYSQSNS
Ga0304730_10004983F019831N/AVTVQRRTHLKQTQSLLPQQSKFDLDGSDLIIDDEVTFGRNLKARDFGKVVEDDLSDYVKFRLWLARQLAMRAYEKARA
Ga0304730_100049836F034176AGGTGGMKYNYGYSSNVKHNDSAGDLEYFISKFDCRIEDSREYNQYRRQAPAYHRDFYDTDSFKMETEILPMKAIHLTSTNLARLVAEQEHMQQLGADAEYGKKCWADERKDRMVRDENPAVAKAYRNYQMLLELARK
Ga0304730_100049841F001008N/AMSKAKHKPYQWIDGETADRITSLNLKDYRAYLKKELKQWKKNPKSDSNPDGYWLHPGDVALNIRTIEALDLIISHFISTEDDIK
Ga0304730_100049863F093773AGGAGMYDIVKNPIPCSGLFATPTLDQIANQIDGFPAETKAQLYLVMQLTLNACHKIVEDEILSKEVFAQ
Ga0304730_10004989F006506GGAGGMKKLITILTLVSLTGCASIMEKIPSRWDVNQAKVITDIQVQVNHFDCKGDQVAQLNALSLNVEWFDIYAKTKPTRDISKLTSTLTTTVKEYQDRLKTGPVSPLYCDLKVKIIKQQTEILTGSVQGRF
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