NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304730_1028136

Scaffold Ga0304730_1028136


Overview

Basic Information
Taxon OID3300028394 Open in IMG/M
Scaffold IDGa0304730_1028136 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2944
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000332Metagenome / Metatranscriptome1283Y
F047558Metagenome149N
F066529Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0304730_10281362F000332N/AMRWLLLLLLVVGLVGAVAKSGCHVREFYGIGYTFHNPTERHQEMVAWLDRNAPYCKSTDYTVIWNNLAEWAGTADSTKLRELVIHGYKEALEREKK
Ga0304730_10281363F066529GAGMIDKIRMFPMVDATGYPDKTDATTRRIEKHQEEYRALVQSNKADQEIEELLMDLYNKKAEQQRLRMEIFNNRKLDIYV
Ga0304730_10281364F047558GGAMVTKKPPAKVAPVKRRTPKPKSEQIINVSISEPAPAPKPEAKKDDSTVGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRTVILNAITNSSHQPQLKEIKVLEHIAERLKKDLEAETVLVHKVALVVNSRITLLSYGPKGRDTTLDGYNSTLFGKDSTRNTAVIAMMNGEVYCDKLVASGKTSEWEEKQGVGYICRGSIPPEMGAFEGYISVGFTKEPQDLGAVKTRINLAATEMA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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