NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304730_1037364

Scaffold Ga0304730_1037364


Overview

Basic Information
Taxon OID3300028394 Open in IMG/M
Scaffold IDGa0304730_1037364 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2456
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000468Metagenome1102Y
F030425Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0304730_10373641F030425GAGGMATTTNYGWTTPDDTALVKDGASAIRTLGSSVDTTTKNLNPETTLGDISYR
Ga0304730_10373642F000468GAGGMTVFTPEWKLTVAGTDYTNIAISDIQHQAGRTDIYTQPSPSYMQVTLVALSGQTLPFAINDSFALQVKNSSGTYVNLFGGDITDITVEVGAFGNVADVINYTILAMGSLVKLARELYSDAVSQDEDGNQIYAILSSVLLGTWNDVPAASTWTGYSATETWANAQNLGLGEIDQPGLYTMQNRSGTEVPDTIYNIASLIANSAFGYLYEDNAGNIGYADADHRQTYLLANGYVDLDANHALGLGLSTITRSGDIRNDIIINYGSNFSLEKTASSASSIALYGYKGESIQSTIHSAVDAQAVADRYIAQRAFPLPVFQSITFPITNPEIDNSDRDNLLGVFMGQPLNIQNLPTQISDGEFEGYVEGWRWSTRFNELFLTINLSPVAFSQVAMRWNTVPIGEAWNTLSNTLTWEYATIVA
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