Scaffold Ga0304730_1070911

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0304730_1070911

Scaffold Ga0304730_1070911

Overview

Basic Information
Taxon OID	3300028394 Open in IMG/M
Scaffold ID	Ga0304730_1070911 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1607
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035768	Metagenome / Metatranscriptome	171	Y
F039639	Metagenome / Metatranscriptome	163	Y
F081346	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_10709111	F035768	GAGG	MKITVEDRLLAAYQAQKLRLRDREDEDFRAQVEAKVFEKIIVDRVRRNLRLDLDKGTNVDVEV
Ga0304730_10709112	F081346	GGAG	MAKPDPNKPIYHTNPPNTVPTRVIPSKPGTYEQVVVPETEANPDKPKKPKKPRK
Ga0304730_10709115	F039639	AGGTGG	MNIDREFIKWFYEDAYPEQGSNRRQVYGMTHNDVNINVIDYWMREAFKAGAQAATHGYEVNALEQFEAFNINRNYPL

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