NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304730_1175204

Scaffold Ga0304730_1175204


Overview

Basic Information
Taxon OID3300028394 Open in IMG/M
Scaffold IDGa0304730_1175204 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)837
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007524Metagenome / Metatranscriptome349Y
F026201Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0304730_11752041F026201AGGAGMQNAKQYITETADGYELSISINEQCGNYKVESIDMFVAKDADEGSSDLAVSYDISTLQNDESARTAGMLLLRNMHSDDEVTVAMGHFYWDGAFTARLQQIIADCGFTTASDITTSEWGMQDEGRASYDAYDLADEIRAIMQTTTA
Ga0304730_11752042F007524N/AKKETQMRKVTKAHVLAINKLMLPLINTVAYITEDENDLGMFTMYASDIAYNANALCDFNVAFDVEALHDNIMRQDTCPREHFYTVLKYIEDNKLISSNMFTCM
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