NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228643_1007498

Scaffold Ga0228643_1007498


Overview

Basic Information
Taxon OID3300028396 Open in IMG/M
Scaffold IDGa0228643_1007498 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 55D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3003
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031877Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0228643_10074985F031877N/ARYCSRILWCSGMVWQKVIPLVFLSGCVAMSPNLEFHEDLVTGQEYYSFELGVSYPKKKFMTPEEWTEYHQSPDSQKEALYATYKEREEIERRWENFIENCLLAGTLDC
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