NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228643_1078604

Scaffold Ga0228643_1078604


Overview

Basic Information
Taxon OID3300028396 Open in IMG/M
Scaffold IDGa0228643_1078604 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 55D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)789
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011937Metagenome / Metatranscriptome285Y
F048245Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0228643_10786041F048245N/AYDSDYLEFVSISVTVKAQEWLTYTMDWEGETVRWGGYDASFGTYTISNTTELFTIRFRVTNQDWDTIPITIGRKTAGTELGWDIEVLNTDGYVNKRMAPFDTNPIDGIYGVVYPVPTQGLLTFDLTVPDNGDYEIRIISYSGVVYKTFRKKFFSGYVSFQTDLSDLSQGVYLLQITNGVFVKTFKIIKK
Ga0228643_10786042F011937N/AMEDKKGGFFSEIKNQIVTGIGLVITAAFGLLIANMQSVFEPKEDKVDLPVMEQRINVPSNTKDTVIVTKTIV
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