NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306909_100129

Scaffold Ga0306909_100129


Overview

Basic Information
Taxon OID3300028405 Open in IMG/M
Scaffold IDGa0306909_100129 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #697 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24865
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (6.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007787Metagenome345N
F014810Metagenome260Y
F037467Metagenome168Y
F044825Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0306909_10012930F007787N/AMKDLTVENFENLNFAQDFSKIDAKNQGLELARTILDNGNVNPLEVMATLVRLSEVINTFQTELKANLDLPEELKLNGVNFKSRQGYAVYDYSQDGMVDHYEKLLKQRKDLIKSACKAGEPVTDPNTSEEINPVPVKNYTKDSIVITF
Ga0306909_10012936F037467N/AMNFIKELQSVLLLGLETNVDAESINLENKLKADPNSITLKELRQIFYHAGIKSITIENTTINI
Ga0306909_1001294F044825AGAAGMEYQELIKIIREELESSELIARVENDDIPSIDLKKRSLYPLVAFYIDSVEITNSVNTFTVQLFIADILDVNKETDQDNQDFIWNQSIAVINNLYNKLNRGLLFEQLVQEIEPINLTPFTDRLDKGLAGMETTLTISVKNNMTLC
Ga0306909_10012941F014810N/AMSIFSENLGVIITAITGAIGGIAAFFTGKKARDSNANFEIGKAYELMARQNNAFIITMTEKIDEQTKKIEHLEGEVFGLRTENRQLLNELKKYRQ
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