NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307247_10187462

Scaffold Ga0307247_10187462


Overview

Basic Information
Taxon OID3300028452 Open in IMG/M
Scaffold IDGa0307247_10187462 Open in IMG/M
Source Dataset NameGoat Fecal Pellet Co-assembly of all samples treated with chloramphenicol from Gen5 and Gen10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)634
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.4149Long. (o)-119.841Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018675Metagenome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0307247_101874621F018675N/AREQKKIKKICEDENIQFNFLWTKIKIRYIFKDEKLI
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Institute for Fundamental Biomedical Research
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