NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257109_1020861

Scaffold Ga0257109_1020861


Overview

Basic Information
Taxon OID3300028487 Open in IMG/M
Scaffold IDGa0257109_1020861 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_2000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2222
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018553Metagenome / Metatranscriptome234Y
F022673Metagenome213Y
F043989Metagenome155Y
F072444Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0257109_10208611F043989N/AMVTALIWKYGLYVIIIWTMFESSCSSGKGNLPYHPPEFAPIYREECYSDSKNFLCMDKEKDANYTSPFLYFLFMRGTMEQ
Ga0257109_10208615F018553AGGMLCIPRLRIAILNEEIALWEKRLSDKPGDIPYLGYMRTTLRGRVKELEDQEKTLDKQEKG
Ga0257109_10208617F072444N/AMPERENNAFWEIAEIIDREMSILRKMRPVGPKEKALLKKMMEDKEKEHEKRTNSQP
Ga0257109_10208618F022673N/AMKKEQIVSPRVEIAEKIHEELLVSLELERKLLKKELTLQETMTERVTVRKDLIKCERKIKDLTEQLQKENNRSKGTKWNQQP
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