NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0257113_1124929

Scaffold Ga0257113_1124929


Overview

Basic Information
Taxon OID3300028488 Open in IMG/M
Scaffold IDGa0257113_1124929 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1320m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)784
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)1320
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015350Metagenome255Y
F039182Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0257113_11249291F039182N/ACADTADAEDSTATTPAEQQQEADKEVSDDETWIAVVMTWNPVKRVIDKEFASEVECWNFYEGGTGESRFGEQHRDHQGNLPTKDSHFGPDYLEYPIRTYRGKDGQGSVWLTCDTKGRYKD
Ga0257113_11249292F015350N/AMKKIYKWLIIIVMAILVGWQYDAALQKNLHEVEIRIKKFESVDLFNILEQISLAHIESVESVDILNKKQMEVQALEKEIKEKFTIQERELRAQVKTIETKLQKLRSELYDGLTKIERNVSTIDSVVDEKFKTLWMMINN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.