NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257112_10141691

Scaffold Ga0257112_10141691


Overview

Basic Information
Taxon OID3300028489 Open in IMG/M
Scaffold IDGa0257112_10141691 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)860
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005608Metagenome / Metatranscriptome395Y
F014511Metagenome / Metatranscriptome262Y

Sequences

Protein IDFamilyRBSSequence
Ga0257112_101416912F005608N/AMKKTTIEVLEEGELIFGSPTAGKYFVRRYEDGEEMGGGFFKTKKEAQQHAREYKKNNG
Ga0257112_101416913F014511AGGAMGMKNVTVKTVVDEKFRFTAMDLNGSVFVFEDKPSIATDIACDTWDVKTGEVLQISPPTPMATSSLDLGDWRESLVELNDEVILD

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