NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137415_10003552

Scaffold Ga0137415_10003552


Overview

Basic Information
Taxon OID3300028536 Open in IMG/M
Scaffold IDGa0137415_10003552 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15495
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007967Metagenome / Metatranscriptome341N
F010242Metagenome / Metatranscriptome306Y
F031051Metagenome183N

Sequences

Protein IDFamilyRBSSequence
Ga0137415_1000355217F031051N/AMVSSADGYRNSPKSRVPALINRGGPWLDARFGRCAHLGQAFFGLLLCRSVVREHTVDGVVRARFRIGLPMVFLLSFALTAAPTVAADGTGSGISTSIGTYLLTPVGSAHEFLHAYLADLGLLINPGDTLIFSWQANNGSGPSIYFEIHAHPYGPYIQYYNATSVSVSNASFTAHDPYSYMVFWRNLSNTTQVNLTYSLVLLLAQPSLWPLYIAPVGMALVGAAAVAVHLRSRRNRDRP
Ga0137415_1000355218F007967GGAGMVVSTDIVGLGLIGFSVNCLMVVFNTIGIEKKDTDKLGGGWGLAHLSLGAMMVLVGVATFMNDPVAVPNLPAISGFFGIALVFYGFFWIFLGASLVRGADLRPVGHVSIGFAIVDLWFLNSSLKFTALTGGKYVSLTILLVVLTVVFFVLYAGVHGKAVAFKVNAVLLIILALLGFYLAFSLIYPGGYIPF
Ga0137415_100035526F010242GGAMRPRIVEWYHGLFHVAQVTIHDRWVKRLRLIAFLAASSIATQIVLRSALGQVGLGNVLPTSVFTILVASAVWLVAYPAMWMRMLTVIVEMEAKKEYAAILSEIHKLHHHHDAGTSAEKPPSASVHGDTTRR
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