NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137415_10011535

Scaffold Ga0137415_10011535


Overview

Basic Information
Taxon OID3300028536 Open in IMG/M
Scaffold IDGa0137415_10011535 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8764
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006542Metagenome / Metatranscriptome370Y
F039568Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0137415_1001153511F039568GAGGMAQEPSQSVANSLGFVTFAECFCINPVYINPVYGGGYYKKRKGWVLIDLATRAETYFKTLRDAKHDLIRLYMEAAPKKIATQGC
Ga0137415_1001153512F006542GAGGMNETELSELLTPSGFFRFLAQQVKLDPEEVKRIYRLGTPWGLWPPDLDLSYETAEAGVDVFTYLAALQPLLDMDTKEKEAQLAAYEATLTGGETTQPIPAVRAHVEKVAALSGEGKETICSLLHALYAYRQRVGRLSIEKVGQFMSRHKMEPEKAASIAKLQRVMVAEIEQRKRLL
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