NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137415_10125419

Scaffold Ga0137415_10125419


Overview

Basic Information
Taxon OID3300028536 Open in IMG/M
Scaffold IDGa0137415_10125419 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2412
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022291Metagenome / Metatranscriptome215Y
F040559Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0137415_101254191F040559AGGAGMRASIAAVVLVLTYSPELRGQTSVRPVDDGLPHYPVASVQTEFGALWRDRAQHPYVCLVGRVALDSSAATYVQVDSLRVADEPWAACNDPAVMGMVKMVDEIPTGTTVDAWGEKMMQQLVRVALRQPNWRIIGVMFAVPTVTIPDTTAVGAPGSDSLRQSLVPAFVWLPRTPDNVRALDEFVPLHTER
Ga0137415_101254193F022291GGAGGMTPPLADDSANVTPDVGPSVSGLTAAQAHELVAAGRAVLVDTRDGRLFDNAHAAGARSLPLAAIEAAQGQVPVGSLPPDRMLILYCA
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