Basic Information | |
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Taxon OID | 3300028536 Open in IMG/M |
Scaffold ID | Ga0137415_10203761 Open in IMG/M |
Source Dataset Name | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1797 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013073 | Metagenome / Metatranscriptome | 274 | N |
F017464 | Metagenome / Metatranscriptome | 240 | N |
Protein ID | Family | RBS | Sequence |
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Ga0137415_102037613 | F013073 | GGAG | MAEDGSDSEAEERQQQDPPDDARIEPFLDMRDPTFRRILRSATSKFNQMICPLMASVCVRDLCMFWNDHSKSCYIVDTLKMNIYHTICPKCGSTNIELSTREQRSGKAKLYRCDTCGNEWGQVH |
Ga0137415_102037614 | F017464 | AGGAG | LTDMLKGSQVLQKTYTYIENVTKESRKALMEEFSQKHKGIAIKAASDTLRQSVLDWFPRRDPMLKLVLEKTSQGKPGDVRMDFLGETKSVRFKVHLHAVFAVSGQSPDAPSFLKEVTLLVDPREFSM |
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