Scaffold Ga0302151_10000085

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302151_10000085

Scaffold Ga0302151_10000085

Overview

Basic Information
Taxon OID	3300028562 Open in IMG/M
Scaffold ID	Ga0302151_10000085 Open in IMG/M
Source Dataset Name	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	54851
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (62.75%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050419	Metagenome / Metatranscriptome	145	Y
F051255	Metagenome / Metatranscriptome	144	Y
F070201	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302151_1000008514	F051255	GAGG	MNAAAARIAHTNHAANEWARSQAARTLVRAAMNSNAVVYRRTWPTLEAIETLGEAEYDPALQFDGFLDSTLDLRDGLSVVEVFAPIDEPAALQEFALLRR
Ga0302151_1000008545	F070201	GGAG	MHTLPLRFLTWGTTTAAVGCAVWLSSADQGAVFCSVGYRATSQAMGIDLPTEPTRAGHSAKLPGSSAAKQLQASAI
Ga0302151_1000008546	F050419	GGAG	MTNATRPTFLRSFGRGSAARRAPDLADMGTAFALDEALDQGSYDTLAPGDSSPPVRAAVPVAPWRLWLGRKLGG

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