NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247843_1010297

Scaffold Ga0247843_1010297


Overview

Basic Information
Taxon OID3300028569 Open in IMG/M
Scaffold IDGa0247843_1010297 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)10005
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012428Metagenome280Y
F053810Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0247843_10102972F053810N/AVLVILVLLDLLDLHKFMALAIQSVDVTQTHQVWPLVQGYVQEALDKGGEFPDSAAGYNVHHVQQYVTSGQWLLVVAIDEENVVHGAMTISFIAYPLHRVAFVTTTGGKFIANPELLEQLKVLVKRHGATKIQAFCRESMVRLLARAGFEPRNTLIEVLV
Ga0247843_10102975F012428GGAMGMFQNQTPPSLPLAPNEYDAVFMSQLANVLRLFFNQINAVQQLNLASLNLDLRTLPTDADYDGLRLGDVYRDTQGGTLQTGTNVLRIKVPIGLFGVQGSGAAGSVGGTIALNLTGVSGSGAVGTMTP

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