NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304731_11590433

Scaffold Ga0304731_11590433


Overview

Basic Information
Taxon OID3300028575 Open in IMG/M
Scaffold IDGa0304731_11590433 Open in IMG/M
Source Dataset NameMetatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-7 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)546
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)18.7998Long. (o)-20.70285Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068409Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0304731_115904331F068409N/ASVLVGLVGTGKARDKGTADEVKRLLSKKSKAGLLNYVEGLGGKLNAMDSYINIAAQSSPMSLHEKLSASARGVLDDLWILAGAVADKGSEDLTDDLSAVLDAMSKPSDMFDDICNFLEGRGDGGLMHASNASQGLELVQSEREKMTEAPGKASITDSIVDYAVGNLMKLKNQVWDDAKSA

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