NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272482_10044249

Scaffold Ga0272482_10044249


Overview

Basic Information
Taxon OID3300028578 Open in IMG/M
Scaffold IDGa0272482_10044249 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1167
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008145Metagenome / Metatranscriptome338Y
F092677Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0272482_100442491F092677GAGMRLFPNVFAAVALVLVACGGQPPADHQAEWRDVLRHKRAAAAPGAAPEHKQAYADAVRGFVQKHPSHSRAQEVWTRLQLEFADDLAAGGRYQDAIRFYRGILTHHPENEDARRGLAIAADRLAVTREKLLALEKGMSQRQVANVLGKPIPGWSRKHRRAGTTFEAWYYRTRTGAVAGVYFRD
Ga0272482_100442492F008145GGAGGMAVRGEEVATSIDAQVRDSIEKMVAEIRSSVEDVRVVVDQQLRAALQSVQADVNSISFLPQIRKAVADLEESIAADAPPVAAAAPGGSGAGRLKTAVQSIERGKSQVDVLNALLEQCLDFGSRAALLILRGETFSGWKGVGFSAHGGNDEMIKRFNAAPGLIPELDR
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