NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247611_10000153

Scaffold Ga0247611_10000153


Overview

Basic Information
Taxon OID3300028591 Open in IMG/M
Scaffold IDGa0247611_10000153 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)141913
Total Scaffold Genes314 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)208 (66.24%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012184Metagenome / Metatranscriptome282Y
F017772Metagenome / Metatranscriptome238Y
F065312Metagenome / Metatranscriptome127Y
F076729Metagenome / Metatranscriptome117Y
F086398Metagenome / Metatranscriptome110Y
F087968Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0247611_10000153101F065312AGGAGGMSKKKNPKQKTWVEVFQSERKEFPQGYCVTRIIPDKRNKKPKHKGREFADHLIDVCGV
Ga0247611_10000153132F012184AGGAGMTINELKTILSGIEGAQNARANKTNFIVVPCEDGIAKVNMQVALAKDTKNHTAFNLEAAIAEYKAWEAEGALRAAERAAKPKVVKGPNPEAQAKRDELDAKITALPAFTEYTATDIFNALAGQLPENMLVMQIGSAAKRLVKAGVLTVSTKDGDKKSYYTKA
Ga0247611_10000153245F017772GGAGGMNEPRLKILPPWTILVRKLEALFDGDPQIAFNVDFSGEHPSVVLSCNNGDKVAALMQILPEEINFGNVTLKVMVDGTPSNRTFKSKVELFDTAFFKNPAYAYSVCPAEEGYQWIGTTYVVFNNCVVQFAADNLNDCHGVISTLYETIASELLTGPATEGVFFNTNVERAGLGMPLGEWP
Ga0247611_1000015350F076729N/AMNLTDDEVLKFLKGSPVFIEDICAVFPATLGQIVDEGYEEF
Ga0247611_1000015396F087968AGGCGGMIKITKGMARKLYNHGEEVMIIPNRIRPNSALASWTRKPEQEEGDFDKLCNAIFYYNCSPETGMNLTYYAKEV
Ga0247611_1000015397F086398AGGAGGMEMTYHVAVQRADRVKHITEEIGLGQIIKEKYTHFNLGQAGRWVCITDTGITIIKDEPKEKIITMYVTTQRELVLVYGGAKNVPAFLRKKVDKNQSKYTQAGKTIWR
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