NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247611_10000183

Scaffold Ga0247611_10000183


Overview

Basic Information
Taxon OID3300028591 Open in IMG/M
Scaffold IDGa0247611_10000183 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)129514
Total Scaffold Genes157 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)138 (87.90%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041054Metagenome / Metatranscriptome160Y
F052997Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0247611_10000183102F052997AGGGGGMGEYYEEVYLKRLNRYGIDFQSRLQRQREENFHRQLLKSVYYVNFDYKDKQYEGEFTPCKQNETKTIHYLLTDVNLNIPNGTILMMPDKDGEREPWMVYYLEDYVASGYNRYFMLKMTHYLTWKDRQGVEQHAWAYFYGQEDNMLKDELKSRSRNKTLYTENLKLSFFITPVNGKIRKDDYFEVGEGDLLEAYVVTGYDIQSTPGVEFVSVDPQYIRDHSAPPEKKEDDKDEDFYWLNKGVTE
Ga0247611_10000183103F041054AGGGGGMTVRNCADIGINAQYIIKRLLANQNLLKLLYYTDKDPLSHDDLTQEQIQTEIFSNFVKIVPRIGPKETAHSIIVLRIARGRGLISNKEFKNVMFSIETFVPQTQWIIKGTNLRPFAIMGEVQKSLNGKKIEGLGKISGGDFDLNFLSEEMTAYEQDFVLTSYD
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