NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247611_10001812

Scaffold Ga0247611_10001812


Overview

Basic Information
Taxon OID3300028591 Open in IMG/M
Scaffold IDGa0247611_10001812 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37041
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013263Metagenome272Y
F015685Metagenome / Metatranscriptome252Y
F023770Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0247611_1000181210F023770N/AMAKVEFDPGIDSVTGILMGTDPFYIRRYPGKNGVMHIVQARPDRSGHTPSAAEAHTRIVFAEKYGHEKHLAFLERKFKNQLTINFNENG
Ga0247611_1000181211F015685N/AMAKITLHGMFARVKGKFNKSETLYFKGCPCGKEQLGVDLLNPSKANGAKNVQAQNALKTAAQAAKTALADPTERATLEAGFAAQSKYTSLFGYTVAQKYVKPNFN
Ga0247611_100018124F013263N/AMQTENLTLLRSLRTQEKAIKARIDSITDAAADEAVAILSSKGLDRGEFTVTGVGTFQLQRTDVFNLADYNKYKGEEAVNWRSEAKKKIKAQNAAKACTAAMSGFLKTFVELNPDKEPDEIKLTVKVVE
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