NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247611_10003476

Scaffold Ga0247611_10003476


Overview

Basic Information
Taxon OID3300028591 Open in IMG/M
Scaffold IDGa0247611_10003476 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23308
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (97.87%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012184Metagenome / Metatranscriptome282Y
F065312Metagenome / Metatranscriptome127Y
F086398Metagenome / Metatranscriptome110Y
F087968Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0247611_1000347617F012184AGGAGMTNVEILNAILAFPGASMARANKINFIVIPTDEGFVKVTVANALAKDTKAHKAFNAEAAIAEYKAYEAEVALREAERASKPAKVKGPNPEAQARRDDLDTKISALPSFTEYTATDILKALAGQVAENVTVMAVGQSAKRLVEKGILTVSNREGDKKSYYTKA
Ga0247611_1000347622F065312AGGAMSKKKNPKQKTWVEVFQSERKEFPQGYCVTRIIPDKRNKKPKHKGRELEE
Ga0247611_1000347624F086398GGAGGMKEQMTYHVAVQRAERVKHIIEDVGLGQIIKEKYTRFSLEQAGRWVCITDTGVTIIKDESKEKIITMYVTTQRELVAVFGGAKKVPAYLRKKVDHNQDKYTERGKTIWRS
Ga0247611_1000347627F087968AGGAMVKITKALARKMYNNGEEVMIIPNKVRPNSMLASWTRKPEQEDGDFDKLCNAIFYYNCSPETGMNLAYYAKEV
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