Scaffold Ga0265306_10087087

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0265306_10087087

Scaffold Ga0265306_10087087

Overview

Basic Information
Taxon OID	3300028598 Open in IMG/M
Scaffold ID	Ga0265306_10087087 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160420 (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1593
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1817	Long. (^o)	7.9018	Alt. (m)		Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062772	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265306_100870872	F062772	GAGG	MSLNGIWSCELGGAYGWEPIGTLFLKDGHLQGCGRNHYTLGRYKAKGDGAVFHMELNQYGKKHTLFGQKREQVCVTVKAKRDGDTMIGEATLPGRKQYGIFLRLQRRADIPKEKAR
Ga0265306_100870873	F062772	GAGG	MNLNGIWSDELAGAYGWEPIGTLFLKDGHITGGGRNHYSIGTYKTKGDGTVLHIEINQFGKKRALFGQKSEKVGVVVKAKRDGDKMIGEATLPGHRQYGIFVRFQRRANLPEEKTH

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