NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265293_10128694

Scaffold Ga0265293_10128694


Overview

Basic Information
Taxon OID3300028603 Open in IMG/M
Scaffold IDGa0265293_10128694 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1920
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Waterloo, Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F103320Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0265293_101286944F103320AGGAGGMAATDNIHIAGVKAIYVTDVKDTPMAVNAFYPSLKVKNPAGDTITVNPVAAAFNERFRENESYPAFILKDPKSGRIDTLTWDVLDWDDDSVALYLGSGEGTGADVWMAPTDSYVAEKTVRIDFLTGWTWYFPRLKIAAAPGGEGSAAGSVNLQVVAKVNPLGELEPFQRIATPVLAAEPTGG
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