NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302237_1001657

Scaffold Ga0302237_1001657


Overview

Basic Information
Taxon OID3300028640 Open in IMG/M
Scaffold IDGa0302237_1001657 Open in IMG/M
Source Dataset NameEnriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Ala
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15139
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (77.27%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018395Metagenome / Metatranscriptome235Y
F020198Metagenome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0302237_100165721F018395GGAGGMSSGLNLDRADTAYAEKAHELSLKKRNWLRHGKGTTAGKIDEMLLDGASIEQMAKKAKTTKATVSVHLTHLRKVHKLAIAKKDGVLRYDVKKMDGKK
Ga0302237_100165722F020198AGGAMLIIPHKKLKSHEATMTYLLDPARLKSFVQELRAYLKSTQHLFQEKEFENDPKQCVHRGMYDRPEPVLFRRFNRFCTERGLDWEGAREMMENMLNERFLCECEIVWRLKDEQVEERLAG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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