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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028648 Open in IMG/M |
| Scaffold ID | Ga0268299_1000004 Open in IMG/M |
| Source Dataset Name | Activated sludge microbial communities from bioreactor in Nijmegen, Gelderland, Netherland - NOB reactor |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1012282 |
| Total Scaffold Genes | 999 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 701 (70.17%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Studying Microbial Cell-Cell Associations In A Wide Range Of Aquatic Ecosystems |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Netherlands: Nijmegen, Gelderland | |||||||
| Coordinates | Lat. (o) | 51.82 | Long. (o) | 5.87 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F024580 | Metagenome / Metatranscriptome | 205 | Y |
| F027065 | Metagenome / Metatranscriptome | 196 | Y |
| F037108 | Metagenome | 168 | Y |
| F044351 | Metagenome | 154 | Y |
| F047544 | Metagenome / Metatranscriptome | 149 | Y |
| F048142 | Metagenome / Metatranscriptome | 148 | Y |
| F053862 | Metagenome / Metatranscriptome | 140 | Y |
| F062893 | Metagenome / Metatranscriptome | 130 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0268299_100000424 | F037108 | AGGA | VSAEDERALWDEATAQLGYHARPGHDWVDTLNRLWRKNRFVMSMDGVLKLPEAPPVLTREMLTVTRERWPLERLAPLVHVDAHDRARPKRDDRPILLLEWRGRHFLIDGINRINRRRRERRAGPHEVLVIHGNTP |
| Ga0268299_1000004289 | F048142 | GAGG | MYSLKFGIHGMISAFVAIAILGITALVLDRGYLVSAPAGVVEVAPPVPVEALDEVVVTAR |
| Ga0268299_1000004344 | F062893 | GAGG | MNSSNPYGYRGALPAVLAALIVGTSGLALDRGHLAGAPAGHVEVGPLTPVDVLPRVAALPAVIVVAPRLAMAAGQGRA |
| Ga0268299_1000004353 | F053862 | N/A | MPNRRAETGAALGRDEKPADVQLTRAFIAVALGLLLAYWVLLPECASPTVRALLPEFRALAGVPTLVI |
| Ga0268299_1000004354 | F024580 | AGGAG | MKTLFHRNTRIAAFAAVVIVGLTGLTLDRGHAGALPQGVIEVGQLETLAVGGTLYAMLPAVEVVGAREVQLADVATHAEPQG |
| Ga0268299_1000004558 | F027065 | AGGAG | MNGRLQGFLEFLDLLAEGQRRQAEVVTGRGFEPDAGLAPVQAASVAKPPLTGHQESRLFAAARVPGVGTRH |
| Ga0268299_1000004647 | F047544 | GGAGG | MNKLAVVVAVLAAPFLLAATTAAGHLYGRYKDGVYLAPGKLFKMKSPFPDEPIVSDGRQPENNNAGAVSFIDMTGRLNGLLYMQDKDGTIGSNASDPTGHLADWFRDLGFPRFFQSGIPDAKVLRDEAGMIAGQPAWIAVAHLPNSSPLGLSTKDSYEVQRNDSWRGMAVVARGKHYYLLQTELRVEKLAPPDWRYDAQSANWNQFVPELEALYQRIEFLKP |
| Ga0268299_1000004843 | F044351 | GAG | MTADPQRAVSHDGDIVRIDGKPLRMEFMVRDAFWAGGRAVVLLDPHAFLDDPAYGGRKAPRDPPKNLRAYAPSGELLWEAQQPEVLDHYYMIESRNPLVALSFSAYRCDLDLASGRILAKKKLK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |